R# 9.1.1 VS2015 - "everywhere in file" causes unwanted format changes

Using R# 9.1.1 with Visual Studio 2015, when I run something that applies to everywhere in the file, such as "use this qualifier" > "arrange qualifiers everywhere in file" it inserts blank XML comments and a file header.

When I run a CTRL E, CTRL C to clean up and use my custom profile it doesn't do this. How can I stop this behavior?

I suspect it is doing a "default full clean up" in the background.

The custom profile is set to be the silent clean up profile.

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